Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: A scanning electron micrograph of P. stutzeri strain RCH2 in exponential phase. Scale bar, 1 μm

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques:

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Sequence data were aligned using the Clustal W program with Pseudomonas spp. downloaded with strain and accession numbers from the RDP database were sequence identity was 97–100% to P. stutzeri strain RCH2. SeaView v4.0 was used to reconstruct the phylogenetic position of P. stutzeri strain RCH2 within the genus Psuedomonas based on 16S rRNA gene sequence by maximum likelihood following a Tamura-Nei, 93 model and the phylogeny was tested using Approximate Likelihood-Ratio Test (aLRT) (given as a percentage) , only values greater than 60% are shown. Azotobacter species were included for comparison and Cellvibrio species were used for the out-group

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: Sequencing, Comparison

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Chromium(VI) reduction by cell suspension of P. stutzeri strain RCH2

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: Suspension

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Classification and general features of Pseudomonas stutzeri strain RCH2 according to the MIGS recommendations [ 25 ]

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: Bacteria, Staining

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Genome sequencing project information for Pseudomonas stutzeri strain RCH2

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: Sequencing

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Global comparison of six P. stutzeri strains with reference to the RCH2 strain chromosome sequence. We aligned each of the individual genome sequences against the RCH2 chromosome sequence using Basic Local Alignment Search Tool BLASTN . The innermost ring indicates the genomic position. The next ring is a plot of G + C content. Next five rings indicate the presence or absence of BLAST hits in that position, with each ring corresponding to one of P. stutzeri strains. The outermost ring indicates positions of RCH2-specific genes, with clusters of chemotaxis, pyruvate dehydrogenase and Flp pili genes marked orange, purple and green, respectively. The graphical view of the alignments was rendered using BLAST Ring Image Generator

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: Comparison, Sequencing, Chemotaxis Assay

Journal: Standards in Genomic Sciences

Article Title: Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

doi: 10.1186/s40793-017-0233-7

Figure Lengend Snippet: Genome statistics for Pseudomonas stutzeri strain RCH2

Article Snippet: Global genomic comparison of six fully sequenced P. stutzeri strains (RCH2, A1501, ATCC 17588 , CCUG 29243 , DSM 4166 , DSM 10701 ) demonstrated that most of the genomic regions are conserved but there are some differences between genome of RCH2 and other genomes (Fig. ).

Techniques: CRISPR